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Submissions from 2018

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Collaborating with Undergraduates To Contribute to Biochemistry Community Resources, Louise K. Charkoudian, Kathyn Haas, Jennifer Heemstra, and Marnix Medema

Development and Characterization of Two Phenylalanine Derivatives for use as Raman Probes in Proteins, Joie Ling '20, Eliana von Krusenstiern '18, and Casey Londergan

Conformational Ensembles of Calmodulin Revealed by Nonperturbing Site-Specific Vibrational Probe Groups, Casey Londergan, K. L. Kelly, S. R. Dallton, R. B. Wai, K. Ramchandani, R. J. Xu, and S. Linse

Characterization of Membrane-Bound Alpha-Synuclein with the Thiocyanate Vibrational Probe Group, Casey Londergan, Franklin A. Kostas '18, Kavita Shroff '17, Kristen E. Fiore '17, and Daniel M. Konstantinovsky '16

Relating the Vibrational Lineshapes of the Thiocyanate (SCN) Probe to Structures and Dynamics in Calmodulin Ensembles via Computational Approaches, Casey Londergan, Rosalind J. Xu '18, Shannon R. Dalton, and Kristen L. Kelly

Probing Substrate Sequestration in Carrier Proteins using Vibrational Spectroscopy Labels and Molecular Dynamic Simulations, Caroline McKeon '18, Louise K. Charkoudian, and Casey Londergan

Integrating GC/TOF Exposome Profiling and Genetic Disease Screening to Provide a Holistic Perspective on Honey Bee Health, Helen K. White, Robert L. Broadrup, S. Schick, C. Mayack, and A. Macherone

Method Evaluations for Adsorption Free Energy Calculations at the Solid/Water Interface through Metadynamics, Umbrella Sampling, and Jarzynski's Equality, Yang Yang, Quichao Wei, Weilong Zhao, Beiliang Cui, Zhijun Xu, and Xiaoning Yang

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Structure analysis of collagen fibril at atomic-level resolution and its implications for intra-fibrillar transport in bone biomineralization, Yang Yang, Zhijun Xu, Weilong Zhao, Ziqui Wang, and Nita Sahai

Submissions from 2017

Vibrational Probes: From Small Molecule Solvatochromism Theory and Experiments to Applications in Complex Systems, Bartosz Blasiak, Casey Londergan, Lauren J. Webb, and Minhaeng Cho

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P450 monooxygenase ComJ catalyses side chain phenolic cross-linking during complestatin biosynthesis, Louise K. Charkoudian

Uncovering Protein-Protein Interactions through a Team-based Undergraduate Biochemistry Course, Louise K. Charkoudian, D. L. Cookmeyer, and S. E. Winesett

Acyl Carrier Protein Cyanylation Delivers a Ketoacyl Synthase–Carrier Protein Cross-Link, Louise Charkoudian, Grace Thiele '17, Connie Friedman '15, Katie Tsai '16, Casey Londergan, and Joris Beld

Utilizing Mechanistic Cross-Linking Technology To Study Protein–Protein Interactions: An Experiment Designed for an Undergraduate Biochemistry Lab, Kara Finzel, Joris Beld, Michael D. Burkart, and Louise K. Charkoudian

Cyanylated cysteine as an infrared reporter of protein-peptide interactions: Experimental measurements, molecular dynamics simulations and semi-quantitative calculations of IR lineshape, Casey Londergan and R. Xu

Dark reactions project: Undergraduate-driven discovery of new materials with cheminformatics, machine learning, and experiments (and robots) at a small liberal arts college, Joshua Schrier

Introduction to Computational Physical Chemistry, Joshua Schrier

Introduction to computational physical chemistry: Integrating computational method development into the standard undergraduate physical chemistry curriculum, Joshua Schrier

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Gas Separation through Bilayer Silica, the Thinnest Possible Silica Membrane, Joshua Schrier, Bowen Yao '17, and John Curry '15

Submissions from 2016

Probing structural adaptability in templated vanadium selenites, Phillip D.F. Adler, Rosalind Xu, Matthew Smith '13, Katherine Elbert '14, Yunwen (Helen) Yang '15, Matthias Zeller, Joshua Schrier, and Alexander J. Norquist

Chiral and achiral copper(II) complexes: structure, bonding and biological activities, Assila Maatar Ben Salah, Nadhem Sayari, Houcine Naili, and Alexander J. Norquist

Impact of Oil Spills on Marine Life in the Gulf of Mexico: Effects on Plankton, Nekton, and Deep-Sea Benthos, Edward J. Buskey, Andrew J. Esbaugh, and Helen K. White

Comprehensive curation and analysis of fungal biosynthetic gene clusters of published natural products, Louise K. Charkoudian, Robert Parry '16, Kathleen Tsai '16, Beatrice Ary '16, Erin E. Berlew '15, Brenna Boehman '16, and David Findley '15

Designing convergent chemistry curricula, Louise K. Charkoudian, Nicole S. Sampson, Krishna Kumar, and Joshua A. Kritzer

Methods of Oil Detection in Response to the Deepwater Horizon Oil Spill, Robyn N. Conmy, Ian R. MacDonald, Christopher M. Reddy, and Helen K. White

New Structural Data Reveal the Motion of Carrier Proteins in Nonribosomal Peptide Synthesis, Tiia Kittilae, Max J. Cryle, Aurelio Mollo, and Louise K. Charkoudian

Deep-sea coral C-13: A tool to reconstruct the difference between seawater pH and B-11-derived calcifying fluid pH, Patrick Martin, Nathalie F. Goodkin, Joseph A. Stewart, and Helen K. White

The role of inorganic acidity on templated vanadate composition and dimensionality, Joshua Schrier, Anahita Nourmahnad '14, and Malia Wenny '17

Examining the diversity of microbes in a deep-sea coral community impacted by the Deepwater Horizon oil spill, Helen White, E. W. Antzis, and R. L. Simister

Submissions from 2015

Probing the Selectivity of Beta-hydroxylation Reactions in Non-ribosomal Peptide Synthesis using Analytical Ultracentrifugation, Louise K. Charkoudian and Robert Fairman

A Peptide from Human Semenogelin I Self-assembles into a pH-responsive Hydrogel, B. Frohm, J. E. DeNizio, D. S. M. Lee, L. Gentile, and Karin S. Akerfeldt

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Evolution of chemical diversity by coordinated gene swaps in type II polyketide gene clusters, Maureen Hillenmeyer, Gergana Vandova, Erin Berlew '15, and Louise K. Charkoudian

Non-Specific Blocking of miR-17-5p Guide Strand in Triple Negative Breast Cancer Cells by Amplifying Passenger Strand Activity, Yuan-Yuan Jin, Eric Wickstrom, and Jade Andrade '15

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Marsh plants mediate the influence of nitrogen fertilization on degradation of oil from the Deepwater Horizon spill, J. Adams Langley, Helen K. White, Reena U. Palanivel, Thomas Shannon, and Samantha K. Chapan

Dynamic Asymmetry and the Role of the Conserved Active-Site Thiol in Rabbit Muscle Creatine Kinase, Casey H. Londergan

EQeq plus C: An Empirical Bond-Order-Corrected Extended Charge Equilibration Metho, Geoffrey C. Martin-Noble '17, David Reilly '16, Luis M. Rivas '16, Matthew D. Smith '16, and Joshua Schrier

The role of non-covalent interactions on vanadium tellurite chain connectivities, Anahita Nourmahnad '14, Matthew D. Smith '13, M. Zeller, G. M. Gerrence, Joshua Schrier, and Alexander J. Norquist

Ethnic/Racial and Genetic Influences on Cerumen Odorant Profiles, Katharine Prokop-Prigge

Role of Noncovalent Interactions in Vanadium Tellurite Chain Connectivities, Joshua Schrier, Anahita Nourmahnad '14, Matthew D. Smith '13, and Matthias Zeller

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Bio-Inspired Electroactive Organic Molecules for Aqueous Redox Flow Batteries. 1. Thiophenoquinones, Joshua Schrier, Sergio D. Pineda Flores '15, Geoffrey C. Martin-Noble '17, and Richard L. Phillips '18

Protein Microgels from Amyloid Fibril Networks, Ulyana Shimanovich, Igor Efimov, Thomas O. Mason, Patrick Flagmeier, and Karin S. Akerfeldt

Degradation of oil by fungi isolated from Gulf of Mexico beaches, Rachel L. Simister, Carolyn M. Poutasse '15, Alana M. Thurston '16, and Helen K. White

Examining the diversity of microbes in a deep-sea coral community impacted by the Deepwater Horizon oil spill, R. L. Simister, E W. Antzis '13, and Helen K. White

Degradation of Oil by Fungi Isolated from Gulf of Mexico Beaches, R. L. Simister, Carolyn M. Poutasse '15, Alana M. Thurston '16, Jen L. Reeve '14, Miranda C. Baker '17, and Helen K. White

Submissions from 2014

Coral Communities as Indicators of Ecosystem-Level Impacts of the Deepwater Horizon Spill, Charles R. Fischer, Amanda W. J. Demopoulos, Erik E. Cordes, and Helen K. White

Drug Delivery: Materials Design and Clinical Perspective, Eric Holowka and S. K. Bhatia

Probing the Phosphopantetheine Arm Conformations of Acyl Carrier Proteins Using Vibrational Spectroscopy, Matthew Johnson '14, Casey H. Londergan, and Louise K. Charkoudian

Helium Isotope Enrichment by Resonant Tunneling through Nanoporous Graphene Bilayers, Salvatore Mandra and Joshua Schrier

Formation Principles for Vanadium Selenites: the Role of pH on Product Composition, Jacob Olshansky '12, Karina Wiener '15, Matt Smith '13, Anahita Nourmahnad '14, Max Charles '15, Joshua Schrier, and Alexander J. Norquist

Identification of volatile organic compounds in human cerumen, Katharine Prokop-Prigge

Long-Term Persistence of Dispersants following the Deepwater Horizon Oil Spill, Helen K. White, Shelby L. Lyons '15, Sarah J. Harrison '13, and David M. Findley '15

Submissions from 2013

Noble Gas Separation using PG-ESX (X=1,2,3) Nanoporous Two-dimensional Polymers, Anna Brockway '12 and Joshua Schrier

Steric-Induced Layer Flection in Templated Vanadium Tellurites, Kelvin B. Chang '10, Matthew D. Smith '13, Samuel M. Blau '12, Ethan C. Glor '11, Joshua Schrier, and Alexander J. Norquist

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catena-Poly [2, 2', 2''-nitrilotris (ethanaminium)[tri--oxido-tris [dioxidovanadate (V)]] monohydrate], Kelvin B. Chang '10, Matthew D. Smith '13, Matthias Zeller, and Alexander J. Norquist

Analysis and Refactoring of A-74528 Biosynthetic Pathway, Jay T. Fitzgerald, Louise K. Charkoudian, Katharine R. Watts, and Chaitan Khosla

Forster resonance energy transfer studies of calmodulin produced by native protein ligation reveal inter-domain electrostatic repulsion, Erik Hellstrand, Stephanie Kukora '04, Cynthia F. Shuman, Karin S. Akerfeldt, Sarah Steenbergen '07, and Beth Krouse '05

A New Raman Spectroscopic Probe of Both the Protonation State and Noncovalent Interactions of Histidine Residues, Kevin W. Hoffman '12, Matthew G. Romei '14, and Casey H. Londergan

Photochemical Oxidation of a Manganese(III) Complex with Oxygen and Toluene Derivatives to Form a Manganese(V)-Oxo Complex, Jieun Jung, Kei Ohkubo, and Katharine Prokop-Prigge

Formation Principles for Templated Vanadium Selenite Oxalates, Jacob H. Koffer '13, Jacob H. Olshansksy '12, Matthew D. Smith '13, Joshua Schrier, and Alexander J. Norquist

The structural transformation of monoclinic [(R)-C5H14N2][Cu(SO4)2(H2O)4]·2H2O into orthorhombic [(R)-C5H14N2]2[Cu(H2O)6](SO4)3: crystal structures and thermal behavior, Salem Saïd, Noureddine Mhadhbi, Fadhel Hajlaoui, and Alexander J. Norquist

Entropy-driven Molecular Separations in 2D-Nanoporous Materials, with Application to High-performance Paraffin/Olefin Membrane Separations, Kylen Solvik '15, Jessica Weaver '13, Anna Brockway '12, and Joshua Schrier

Expanding the Fluorine Chemistry of Living Systems Using Engineered Polyketide Synthase Pathways, Mark C. Walker, Benjamin W. Thuronyi, Louise K. Charkoudian, and Brian Lowry

Unresolved Complex Mixture (UCM) in Coastal Environments Is Derived from Fossil Sources, Helen K. White, Li Xu, Paul Hartmann, and James G. Quinn

Submissions from 2012

Calbindin D28k, Karin S. Akerfeldt, S. Linse, M. Bauer, and T. Cedervall

Calcium-Dependent Interaction of Calmodulin with Human 80S Ribosomes and Polyribosomes, P. Behnen, E. Davis, Erin Delaney '12, and Karin S. Akerfeldt

Natural product inhibitors of glucose-6-phosphate translocase, Louise K. Charkoudian, Bailey P. Farrell, and Chaitan Khosla

From Racemic to Polar Materials, R. Gautier, Alexander J. Norquist, and K. R. Poeppelmeier

Sophorolipid Analog Compositions, Richard A. Gross and Mark H. Schofield

Monitoring structural transitions in intrinsically disordered proteins by vibrational spectroscopy of cyanylated cysteine, J. Habchi, Casey H. Londergan, S. Longhi, and Hailiu Yang '11

Synthesis, crystal structures and thermal behaviour of organic-inorganic hybrids incorporating a chiral diamine, Fadhel Hajlaoui, Houcine Naili, Samia Yahyaoui, and Alexander J. Norquist

Helium Tunneling through Nitrogen-Functionalized Graphene Pores: Pressure- and Temperature-Driven Approaches to Isotope Separation, A. W. Hauser, Joshua Schrier, and P. Schwerdtfeger

Role of Hydrogen-Bonding in the Formation of Polar Achiral and Nonpolar Chiral Vanadium Selenite Frameworks, Jacob H. Olshansky '12, T. T. Tran, K. J. Hernandez, Joshua Schrier, and Alexander J. Norquist

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Carbon Dioxide Separation with a Two-Dimensional Polymer Membrane, Joshua Schrier

Ethanol concentration by forward osmosis with solar-regenerated draw solution, Joshua Schrier

Thermally-driven isotope separation across nanoporous graphene, Joshua Schrier and James McClain '11

Inducing polarity in [VO3]nn- chain compounds using asymmetric hydrogen-bonding networks, Matthew D. Smith '13, Samuel M. Blau '12, Kelvin B. Chang '10, Joshua Schrier, and Alexander J. Norquist

Surprising metal binding properties of phytochelatin-like peptides prepared by protease-catalysis, Kodandaraman Viswanathan, Mark H. Schofield, Iwao Teraoka, and Richard A. Gross

Multiple lines of evidence link deep-water coral damage to Deepwater Horizon oil spill., Helen K. White

Impact of the Deepwater Horizon oil spill on a deep-water coral community in the Gulf of Mexico, Helen K. White, Pen Yuan Hsing, Walter Cho, and Timothy M. Shank

Reply to Boehm and Carragher: Multiple lines of evidence link deep-water coral damage to Deepwater Horizon oil spill, Helen K. White, P. Y. Hsing, Walter Cho, and Timothy M. Shank

Covalently Bound Azido Groups Are Very Specific Water Sensors, Even in Hydrogen-Bonding Environments, Marta P. Wolfshorndl '13, Rachel Baskin '14, Ishita Dhawan '14, and Casey H. Londergan

Submissions from 2011

Using Infrared Spectroscopy of Cyanylated Cysteine To Map the Membrane Binding Structure and Orientation of the Hybrid Antimicrobial Peptide CM15, Katherine N. Alfieri '10, Alice R. Vienneau '12, and Casey H. Londergan

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The Dissociation of Vibrationally Excited CH3OSO Radicals and Their Photolytic Precurson, Methoxysulfinyl Chloride, Bridget W. Alligood, Caroline C. Womack, Daniel B. Straus, and Frances Rose Blase

Probing the interactions of an acyl carrier protein domain from the 6-deoxyerythronolide B synthase, Louise K. Charkoudian, Corey W. Liu, Stephania Capone, and Shiven Kapur

New Solid Acids in the Triple-Layer Dion-Jacobson Layered Perovskite Family, Margret J. Geselbracht, Helen K. White, Jeanette M. Blainea, and Miranda J. Diaz

[R-C7H16N2][V2Te2O10] and [S-C7H16N2][V2Te2O10]; new polar templated vanadium tellurite enantiomers, Ethan C. Glor '11, Samuel M. Blau '12, J. Yeon, Alexander J. Norquist, and Joshua Schrier

Understanding an Order-Disorder Phase Transition in Ionothermally Synthesized Gallium Phosphates, Jacob H. Olshansky '12, Samuel M. Blau '12, M. Zeller, Alexander J. Norquist, and Joshua Schrier

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Fluorinated and Nanoporous Graphene Materials As Sorbents for Gas Separations, Joshua Schrier

Beyond Charge Density Matching: The Role of C–H···O Interactions in the Formation of Templated Vanadium Tellurites, Matthew D. Smith '13, Samuel M. Blau '12, Kelvin B. Chang '10, Joshua Schrier, and Alexander J. Norquist

From computational discovery to experimental characterization of a high hole mobility organic crystal, A. N. Sokolov, S. Atahan-Evrenk, R. Mondal, and Joshua Schrier

Predicting organic thin-film transistor carrier type from single molecule calculations, Adam V. Subhas '09, Jennifer Whealdon '13, and Joshua Schrier

Submissions from 2010

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Probing Structural Transitions in the Intrinsically Disordered C-Terminal Domain of the Measles Virus Nucleoprotein by Vibrational Spectroscopy of Cyanylated Cysteines, Connor G. Bischak '10, Sonia Longhi, David M. Snead '08, and Casey H. Londergan

The Role of Stereoactive Lone Pairs in Templated Vanadium Tellurite Charge Density Matching, Kelvin B. Chang '10, Desmond J. Hubbard '09, M. Zeller, Joshua Schrier, and Alexander J. Norquist

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In Living Color: Bacterial Pigments as an Untapped Resource in the Classroom and Beyond, Louise K. Charkoudian, Jay T. Fitzgerald, Chaitan Khosla, and Andrea Champlin

The Effects of a-Helical Structure and Cyanylated Cysteine on Each Other, Lena Edelstein '09, Matthew A. Stetz '08, Heather A. MacMahon '10, and Casey H. Londergan

Synthesis and Crosslinking of L-DOPA Containing Polypeptide Vesicles, Eric Holowka and Timothy J. Deming

A Slow Leak Synthetic Route to Organically Templated Gallium Sulfates, E. A. Kaufman, M. Zeller, and Alexander J. Norquist

Cyanylated Cysteine: A Covalently Attached Vibrational Probe of Protein-Lipid Contacts, Heather A. MacMahon '10, Katherine N. Alfieri '10, Katherine A. A. Clark '09, and Casey H. Londergan

Multiple Exciton Generation in Graphene Nanostructures, James McClain '11 and Joshua Schrier

Integrated Protein Array Screening and High Throughput Validation of 70 Novel Neural Calmodulin-binding Proteins, David J. O'Connell, Mikael C. Bauer, John O'Brien, and Karin S. Åkerfeldt